SE2851246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10251
  • Sorghum bicolor
  • SE2851246
  • PIF/harbinger
  • To75
  • chromosome_9:1399727-1400017
  • TTA
  • AGGGCTTGTTTAGCACAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT           A C    CTCA   TCACTAGTAAAGCTGTTTTTTTTAGAAAATAGCTTCATGAGTGACTTTCTAGATGAAGCTGAGCTGTTTTGGAAAAAGTGTTTGGCAAAATAGCTTCACAAACTACTTCATGCATAGTT
  AGGGCTTGTTT G ACAG    ACT                                                                                                                       
  ||||||||||| | ||||    |||                                                                                                                       G
  TCCCGGACAAA C TGTC    TCG                                                                                                                       
AT           C A    --AC   ATAAAGGTTTTATCGAAGTACCCACTTCGAGAAAAAGGGGAGGAGAGTGTTTCTGTATTCAACCCTACTTCGACCTTTTTCATCGAATAACGTCGAGAGAGAGAGAGTAAAGAGAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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