SE2851249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10254
  • Sorghum bicolor
  • SE2851249
  • PIF/harbinger
  • To108
  • chromosome_1:4493590-4494261
  • TAA
  • AGAGCATCTCCAATGGTTTGGTAATTTTGGTTTGGCATTTGTTGTTGTTTGCCAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                           T      G     G              CTCCCAAATATAAATGCA    A      A  G  AT      -------------     A  C     ---T         --ATTA   AAAGTGAACCCGACCAACTCCTTTCGCGCTTCTTTCTGTCGCGGGCGCGAGTTGGTTCGCGCCCATTCTCATTCGCATGTATGGAGGTGTCGTCGCTCGCAGGTATGTGTACGTCGCCGCCGGTTGTGCCCTCTTCTTCGTGATGCATATCCTTGATGCACCAGATTTCTCTGTTCTCTGTCTCATCTGTCCCATCTTCTCCCACCA
  AGAGCATCTCCAATGGTTTGGTAATTT GGTTTG CATTT TTGTTGTTTGCCAA                  AAAG AAAAAT TA TC  CTCCAA             GGGTT GG ATTTT    GACTTGGCA      GCC                                                                                                                                                                                                               
  ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||                  |||| |||||| || ||  ||||||             ||||| || |||||    |||||||||      |||                                                                                                                                                                                                               C
  TCTCGTAGAGGTTGCCAAACTGTTAGA TCAAAC GTAAA GACAATAAACGGTT                  TTTC TTTTTA GT AG  GAGGTT             CCCAA CC TAAAA    TTGAACCGT      TCC                                                                                                                                                                                                               
AA                           -      G     -              ------------------    C      -  G  --      ACCAAAACATTTG     A  A     TCAT         AAACTC   GAGGGGAACCGTATAAACGCTCAACCCAACACCAAACCGTTTGTGCAGGCGGGCCATAAGGACGCAGGTAGGGCGCGCGCTCGTCCAGAGAATCAACGCCAAAGGAAGCAGCGACCTTCAGGAGCACGGTTTATCAAGGGTGCGGCCGTTTAGAGGAGCACACGACGACAACAGACGGATAACGAACGGCATGACGACGTCTCTTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End