SE2851253

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10258
  • Sorghum bicolor
  • SE2851253
  • PIF/harbinger
  • To49
  • chromosome_9:50084140-50084490
  • TAA
  • AGGCCTTTGTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA       T       -AGGTGCG         A   GGT   A    A       CATA     -T  G A           -   CTA        ---           AACTAGCC      C  C           A     C   A   A     C    A -ACAT   GGTTA
  AGGCCTT GTTTAGT        CGAAAAGTT TTG   GTC CATC GATGTTT    GGATG  TG A GGAGTATTTAG ATA   ATAAAAAA   ACTAATTACAT        TGGAAA TA GAGACGAATTT TTAAG CTA TTA TCTGT ATTA C     GTG     
  ||||||| |||||||        ||||||||| |||   ||| |||| |||||||    |||||  || | ||||||||||| |||   ||||||||   |||||||||||        |||||| || ||||||||||| ||||| ||| ||| ||||| |||| |     |||     C
  TCCGGAA CAAATCA        GTTTTTCAA AGT   TAG GTAG TTACAAA    CCTGT  AC T CCTCGTAAATT TAT   TATTTTTT   TGATTAATGTG        ATTTTT GT CTCTGCTTAGA AATTC GAT AAT AGGTA TAAT G     CAC     
AA       -       AGGAGTAG         A   GAG   G    C       ----     GT  G A           A   --C        ATT           CCAAACCA      A  A           A     A   A   C     C    C GAATT   GATGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End