SE2851256

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10261
  • Sorghum bicolor
  • SE2851256
  • PIF/harbinger
  • To23
  • chromosome_3:5457256-5457556
  • TAA
  • AGGGGGTGTTTAGTTCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                   -ATAAAA   AAAACGCAAAATGCCAACTACTTTGGAATGATGGAATGCAAAATGCCAAAATTTTCAGGGTTATGTTTAGTTCCATCCAAAATGCAGAATTTATTGCCCTCATGAGAGCCTCTTGGGGCT
  AGGGGGTGTTTAGTTCCCC       TGC                                                                                                                        
  |||||||||||||||||||       |||                                                                                                                         
  TCCCCCACAAATCAAGGGG       GGT                                                                                                                        
AA                   AAGATAA   TTTTTTAAACCCAAAACGAAGTAATAAAACGTATTACCTTGATTTACGTTTAAAAAACCGTTTTTCCACCAATAAGAGGTAAAACCTAAAACCGGAGTTCTCCGGTTTTTTTCGGTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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