Plant MITE

SE2851262

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10267
Sorghum bicolor
SE2851262
PIF/harbinger
To89
chromosome_4:58855599-58855846
TTA
AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT               CACC      TTCAAAAAAAATTCA       ----------    CA   ----CAAATC        ----CA    TGA   ACTAAATAAAGAAGAAAACAAAAACTAATTGCACGGTTTGTC
  AGGCCTTGTTTAGTT    CCGAAA               AGATTTC          CCGT  CAT          TTGTGGCA      TGCA   AGT                                          
  |||||||||||||||    ||||||               |||||||          ||||  |||          ||||||||      ||||   |||                                           
  TCCGGAACAAATCAA    GGCTTT               TCTAAAG          GGCA  GTA          AACATCGT      CAGG   TTA                                          
AT               ----      ---------------       TCTAAACCAT    TC   AAAGCAAACA        TTATAA    ---   GTATTTGATTGATCTGAGTTTTCTAAGCAGAGCATTTAATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851262

TTAGGCCTTGTTTAGTTCACCCCGAAATTCAAAAAAAATTCAAGATTTCCCGTCACATCAAATCTTGTGGCACATGCATGAAGTACTAAATAAAGAAGAAAACAAAAACTAATTGCACGGTTTGTCTGTAATTTACGAGACGAATCTTTTGAGTCTAGTTAGTTTATGATTGGACAATATTTGCTACAAACAAACGAAAATGCTACGGTACCAAATCTGAAATCTTTTCGGAACTAAACAAGGCCTTA

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