Plant MITE

SE2851265

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10270
Sorghum bicolor
SE2851265
PIF/harbinger
To50
chromosome_8:3563426-3563717
TTA
AGAGCAACTCCAAGAGACTCTCTAAATC

Secondary structure and sequence

TSD TIR

5'

3'

TT      A  C      --------------            -----C    -  AATGCTAGGAATAAAGATTTTGGTGAAAAATTATCCTCCAACAGCTTGTCTAAATGGTTATATAAATATAGCCATCTTCTATTTCAGATTGTTCGCTAG
  AGAGCA CT CAAGAG              ACTCTCTAAATC      TTCC TA                                                                                                   
  |||||| || ||||||              ||||||||||||      |||| ||                                                                                                    
  TCTCGT GA GTTCTC              TGAGAGATTTAG      ATCT TT                                                                                                   
AT      A  A      AGAAACATTTAAAG            TAGTAA    C  GGTAAAGGTATTTTTACGAAAGATATAGAGAAGTGAGAGGTTGTTGAAAAGACAGAGAGCACGCGTGAGATCTCTCAGTAAGAGTAGAAGATAAAAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851265

TTAGAGCAACTCCAAGAGACTCTCTAAATCCTTCCTAAATGCTAGGAATAAAGATTTTGGTGAAAAATTATCCTCCAACAGCTTGTCTAAATGGTTATATAAATATAGCCATCTTCTATTTCAGATTGTTCGCTAGCTAAAAATAGAAGATGAGAATGACTCTCTAGAGTGCGCACGAGAGACAGAAAAGTTGTTGGAGAGTGAAGAGATATAGAAAGCATTTTTATGGAAATGGTTCTCTAAATGATGATTTAGAGAGTGAAATTTACAAAGACTCTTGAAGATGCTCTTA

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