SE2851267

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10272
  • Sorghum bicolor
  • SE2851267
  • PIF/harbinger
  • To1
  • chromosome_3:68268638-68268875
  • TAA
  • AGGCCTTGTTTAGTTTGCAAAATTTTTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -C            TTTTG    CTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCTAATCATGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATT
  AGGCCTTGTTTAGTTTG  AAAATTTTTGGG     GCTA                                                                               
  |||||||||||||||||  ||||||||||||     ||||                                                                                
  TCCGGAACAAATCAAGC  TTTTAAAAATTC     AAAA                                                                               
AA                 AT            ---TA    GCAGTGTAGTTTAGAAACCAGCGTACGTACTTCGTAATTTATATCTGCTTTTATTTTTGATTAATGTGTCAAATAGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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