SE2851269

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10274
  • Sorghum bicolor
  • SE2851269
  • PIF/harbinger
  • To1
  • chromosome_1:64984207-64984455
  • TGA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG               CACC       --CCAAA      TT - GATTCCCCGTCACATCGAATCTTGCGACACATGCATGGAGCATTAAATATAGATAAAAATAAAAACTAATTACACAGTTTGTC
  AGGCCTTGTTTAGTT    CCAAAAA       AACTTT  A A                                                                                   
  |||||||||||||||    |||||||       ||||||  | |                                                                                    
  TCCGGAACAAATCAA    GGTTTTT       TTTTTA  C G                                                                                   
AG               ----       CAAAACT      -- T TGACATCGTGAAAGCAAAAATAAACTGTTTGTAACAAGTTAGTACTTCATTGATCCGAATTTTCTAAGCAGAGCGCTAAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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