SE2851270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10275
  • Sorghum bicolor
  • SE2851270
  • PIF/harbinger
  • To22
  • chromosome_7:5089403-5089651
  • TAA
  • AGAGCAAGTATTATAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         ATT      -      ---  -   G   AAA G  GAGGTGGAGGAGAGAAGGGAGGAGAGAGAGGAGAAGCGAGCTGTAAACTTACAGCCAGCCTAGGCACAGGAATCAAGAAACT
  AGAGCAAGT   ATAGTG GGCTGT   AA GCT GCT   T CT                                                                                  
  |||||||||   |||||| ||||||   || ||| |||   | ||                                                                                  T
  TCTCGTTCA   TATTAT TCGGGT   CG CCG ACA   T TC                                                                                  
AA         AAT      G      GAA  A   -   --- -  CAAAGAATGTCGGAAGAGAGTCGGGTGGGTATGTTATCAATCGATAAGTGATAATTATGTACCGGGTGAACAGAGAGAGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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