Plant MITE

SE2831271

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10276
Sorghum bicolor
SE2831271
hAT
Hat7
super_73:10243-10433
CCTTTAGA
CTTTAGACAATGTTTTCAAGTCGTC

Secondary structure and sequence

TSD TIR

5'

3'

C  TT  A           A      --CA  --   T  C     ATCGTCCTAGTCGGTCCCAGGTGACTGATCAGGGGTACTGTCGACCCGTAAA
 CT  AG CAATGTTTTCA GTCGTC    AT  TAA CA GATTA                                                    
 ||  || ||||||||||| ||||||    ||  ||| || |||||                                                    A
 GA  TC GTTACAAAAGT CAGCAG    GC  GGA CC AGCTG                                                    
A  TT  C           C      ATCA  TT   -  -     GACCCTGGTTGGTCCTGCTAATTTGTACTGATTAGCGCTAATTAGCCTACTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831271

CCTTTAGACAATGTTTTCAAGTCGTCCAATTAATCACGATTAATCGTCCTAGTCGGTCCCAGGTGACTGATCAGGGGTACTGTCGACCCGTAAAAGTCATCCGATTAATCGCGATTAGTCATGTTTAATCGTCCTGGTTGGTCCCAGGTCGACCAGGTTCGACTAGACGACCTGAAAACATTGCCTTTAGA

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