Plant MITE

SE2851275

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10280
Sorghum bicolor
SE2851275
PIF/harbinger
To50
chromosome_4:45763644-45763947
TTA
AGAGCATCTCCAAGAGACTCTCTATATTCTTCCTATATT

Secondary structure and sequence

TSD TIR

5'

3'

TT                A  C    T   ---       T   ----C       ATGTTAGGAATAGAGATTTTGATGAAAAATTACTCTCCAACAGCTTCTCTAAATGGTCATCCAAATATAGCCATTGTCTATTCTGAATTTTTCGCTAGC
  AGAGCATCTCCAAGAG CT TCTA ATT   CTTCCTA ATT     TTCCTAA                                                                                                   
  |||||||||||||||| || |||| |||   ||||||| |||     |||||||                                                                                                   C
  TCTCGTAGAGGTTCTC GA AGAT TAG   GAGGGAT TAG     AACCTCT                                                                                                   
AT                G  A    T   AGT       T   TAGTA       CAGTAAATGTATTTTTAGCGAAAAATATAGAAAGGTGAGAGGTTGTTAAAACGATTTAGAGTACACGTGAGATCTCTCAGTAAGAACAGAAGATATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851275

TTAGAGCATCTCCAAGAGACTCTCTATATTCTTCCTATATTCTTCCTAAATGTTAGGAATAGAGATTTTGATGAAAAATTACTCTCCAACAGCTTCTCTAAATGGTCATCCAAATATAGCCATTGTCTATTCTGAATTTTTCGCTAGCCAAATATAGAAGACAAGAATGACTCTCTAGAGTGCACATGAGATTTAGCAAAATTGTTGGAGAGTGGAAAGATATAAAAAGCGATTTTTATGTAAATGACTCTCCAAATGATGATTTAGGGAGTGAGATTTAGAAAGGCTCTTGGAGATGCTCTTA

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