SE2851276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10281
  • Sorghum bicolor
  • SE2851276
  • PIF/harbinger
  • To1
  • chromosome_2:4321278-4321526
  • TTA
  • AGGCCTTGTTTAGTTCACTCTGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                A  CT     CCAAAAA   -TT     TTCCCCGTCACATCGAATCTTGCGACACATGCATGAAGCATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTC
  AGGCCTTGTTTAGTTC CT  GAAAT       GTT   CAAGA                                                                                 
  |||||||||||||||| ||  |||||       |||   |||||                                                                                 T
  TCCGGAACAAATCAAG GA  TTTTA       CTT   GCGAT                                                                                 
AT                -  TT     ----AAA   AAA     GACATCGTGAAAGCAAAAATAAACTGTTTATAACAGGTTAGTATTTGATTGATTCTAGTTTTCTAAACAGAGCGCTAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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