SE2851281

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10286
  • Sorghum bicolor
  • SE2851281
  • PIF/harbinger
  • To11
  • chromosome_2:49319414-49319647
  • TAA
  • AGGCCCTGTTTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   CCC         CCCTCCTATAA    -    ---CCT    ACATCGAATGTTTGGATACATGCATGAAGTATTAAATATAGATTATTTACGAAACTAAAAACACAGCTAGAGAA
  AGG   TGTTTGGTT           ACTT TAGT      TATC                                                                          
  |||   |||||||||           |||| ||||      ||||                                                                          T
  TCC   ACAAACCAA           TGAT TCAA      CATG                                                                          
AA   CCC         -----CCTCCA    T    ATTATC    ACATCGTGTAAACATTGATATCGTTAATCCAGGTTAGTACCTGATTAATCCGAATTTTTTAGCAGAGCGTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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