SE2851282

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10287
  • Sorghum bicolor
  • SE2851282
  • PIF/harbinger
  • To8
  • chromosome_4:57983980-57984176
  • TTA
  • TAGGGTCTGTTTGGATACCCTCCTCTAAATTTTAGAGCTCTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
T                A  -                         ---CTTTA    TAAAGCTCCAAACAGGTGGTCTAAAGTTAGCTCTAAACTTTTG
 TAGGGTCTGTTTGGAT CC CTCCTCTAAATTTTAGAGCTCTAAA        GAGC                                           
 |||||||||||||||| || |||||||||||||||||||||||||        ||||                                            
 ATCCCGGACAAACCTA GG GAGGGGATTTGAAATCTCGAGATTT        TCTT                                           
A                -  A                         TTGCAATC    GAAATCTAGTCAATACTCCAGATTACGAGATTACACTCCACCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End