SE2851284

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10289
  • Sorghum bicolor
  • SE2851284
  • PIF/harbinger
  • To4
  • chromosome_4:5555644-5555877
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                GTGA        GGATTT    A  G  G   TT   TT G A       ATTATTGTCTAACC    ATTAACTAGGCTCAAAAGTTTCGTCTCGCAAATTACAGGCA
  AGGCCTTGTTTAGTTC    AAATTTTT      GGAT CT TA CAC  TCG  T T TTTGACA              ATGG                                         
  ||||||||||||||||    ||||||||      |||| || || |||  |||  | | |||||||              ||||                                          
  TCCGGAACAAATCAAG    TTTAAAAA      TCTA GA GT GTG  AGC  A A AAGCTGT              TATG                                         
AT                --GG        ---AGT    A  G  A   -T   TT G -       -------------G    TACTTCGTAATTTATATTTATTTTTTTGATTAATGTGTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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