SE2851286

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10291
  • Sorghum bicolor
  • SE2851286
  • PIF/harbinger
  • To113
  • chromosome_7:53137414-53137953
  • GTG
  • GGCGCCCTTAGTCACCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GT      --           GGAT G       ACGCG   A   - T    ---- C    ACGTCGTCCCAAATCACGGAACGGGAACGCGCAGGGACGGCTGCCGGAACGCCGGCGGAACTCGACCTCGCTGCCCGCGGGAACTCGACCGCGCCACCACGCGAACTCGACCGCGCCGCCGTGGGAACTCGACCGCGCCGCATCAGGAAGAACAAGAAGTCGCGCGGAGCGTCTGCTGCATCGGGGCAAGGTGAGGGAGGCGAAGCGCAAGCGGT
  GGCGCC  CTTAGTCACCG    C CGGGTCG     GCG TCC T GTTC    C GGGA                                                                                                                                                                                                                       
  ||||||  |||||||||||    | |||||||     ||| ||| | ||||    | ||||                                                                                                                                                                                                                       C
  CCGCGG  GAATCAGTGGC    G GCCCAGC     TAG CCC G TTCC    C CCTG                                                                                                                                                                                                                       
        TG           ACAT G       -----   -   A -    TTGG -    CTTCTTGCACCATGCGGTTAAAAGTTATGACAAGCCTTGCTGACTCATATGTCGAAGTCGTGCAAGATTTAATTGTACTTGGCACTAGGTTCAATTAAACCCCGCTGCAAGGACTTTGCTGCTCTTCCTTGCTCCCTGCTCTTCCTTGTTCCCTGTTGCAAGGACGTCTACGAGCCGAGGAAGGTGGAAGGGCTACAACTAATTACCCGCGACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3