SE2851290

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10295
  • Sorghum bicolor
  • SE2851290
  • PIF/harbinger
  • To1
  • chromosome_6:59004362-59004610
  • TAA
  • AGGCCTTGTTTAGATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C              CCCAAAAACTCAAAACTTTA     ----   TCCATCACATCGAATCTTGCGGCACATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTACACAGTTTG
  AGG CTTGTTTAGATGCA                    CAAGA    TTC                                                                            
  ||| ||||||||||||||                    |||||    |||                                                                             
  TCC GAACAAATCTACGT                    CTGTG    CGT                                                                            
AA   C              ---TTTAAAAAAACCTAAAA     ACAT   AAAAGCAAAAATAAACTGTTTGTAACAGATTAATACCTCATTGATCCGAATTTTCTAAGCAGAGCGCTAAATGTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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