Plant MITE

SE2831291

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10296
Sorghum bicolor
SE2831291
hAT
Hat86
chromosome_2:58857823-58858370
CTAGCAGG
CTAGCAGGTCAGGGTGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

   A  A              -CAATTAAC  ---  ACCGAGGAACCGAACCGAAAGAACCGGAACCGAAACCGAAAGAACCGGAACCGAAAAAATCGGTTCCTTATTCGGTTCCAAGTTTTGAGGAACCGAAATAACCGAGAACAATTCGGTTCCTACCCTCGGTTAACCGAATTAACCGAAAGAACCGAAATTCATGAATTTTACTTTACTTACTAGTATTTTATAAGACAAAGTTTGATTTTTGTGTGACGTCTCATACTAAATTACTATGTA
 CT GC GGTCAGGGTGGGCA         CG   AA                                                                                                                                                                                                                                                
 || || ||||||||||||||         ||   ||                                                                                                                                                                                                                                                 
 GA CG TCAGTCCCACCCGT         GC   GC                                                                                                                                                                                                                                                
G  -  A              AAGTCAAGA  CAA  CAAAGCCAAGCCAAAGGAGCCAATAAATACTTTAAGCCAAAGTTTTTTTAAATCCTTGGCTCGTAAAGCCAAGAGCCAATAAAACCAAGCCAAGGCCAAGAATGGCTTGATTGGCTTAAAAAGATCGTTTCTAATTATGTTGTTTTTTTTATACATCCAAAATTTCGTTTATATCCGTTGTGGTGAAGATTAATCTATTATTATTAACCATTCTAATGTTATCGTTATATCATTGTATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831291

CTAGCAGGTCAGGGTGGGCACAATTAACCGAAACCGAGGAACCGAACCGAAAGAACCGGAACCGAAACCGAAAGAACCGGAACCGAAAAAATCGGTTCCTTATTCGGTTCCAAGTTTTGAGGAACCGAAATAACCGAGAACAATTCGGTTCCTACCCTCGGTTAACCGAATTAACCGAAAGAACCGAAATTCATGAATTTTACTTTACTTACTAGTATTTTATAAGACAAAGTTTGATTTTTGTGTGACGTCTCATACTAAATTACTATGTATTTATGTTACTATATTGCTATTGTAATCTTACCAATTATTATTATCTAATTAGAAGTGGTGTTGCCTATATTTGCTTTAAAACCTACATATTTTTTTTGTTGTATTAATCTTTGCTAGAAAAATTCGGTTAGTTCGGTAAGAACCGGAACCGAACCAAAATAACCGAGAACCGAAATGCTCGGTTCCTAAATTTTTTTGAAACCGAATTTCATAAATAACCGAGGAAACCGAACCGAAACCGAACCGAGAACTGAATGCCCACCCTGACTAGCAGG

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