Plant MITE

SE2851293

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10298
Sorghum bicolor
SE2851293
PIF/harbinger
To114
chromosome_5:9746791-9747451
TTA
AGAGCATCTCCAACAGTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TT                     CAAATAAG   GCCA CTTTAAAAATTTGGTAAAACAATAAAATTTTATCTCCAACAGTTTGCTAAATGAGGTTGCTATTTTTAACAACTTGGTATTCCACCCCTCCGCGCGCGCATCTTTACGCGCGCGTATCTCACTTCGCATCGCGAGCTGCAGGCGTCTCACCGTCGGTACTGCTGTCAGGTGTCAGTTGATGCACAGCACCTTGCCGCCCTTGTGATGTTGCTGTCGGCTGTCAGGTGATGCACCACGCCTCGCCGTTGTCAGGTGTGCTGATGCTGCTGGTGGCCGGCAGTTTCTGCTTTGTTC
  AGAGCATCTCCAACAGTTTGC        GTT    T                                                                                                                                                                                                                                                                                                      
  |||||||||||||||||||||        |||    |                                                                                                                                                                                                                                                                                                      C
  TCTCGTAGAGGTTGTCAAACG        AGT    G                                                                                                                                                                                                                                                                                                      
AT                     --ATTTTA   ---- AATCGTTTATAACACTAAACAGTTGAGGGATTTTATATACCGTTCACTTTTTTGCCTGAGAGAGGTTATCAAACGATAAAATTGAATCATTTGAAAATTTTTTATCCGGGTGTTGGATGACAAGGGTTGAATTTCTTGGACGTATAATAGATCTAAATATAAAGTAAGTCAAAAATCATCTTATTTACAGGTGTTACAAATAACAGAATACTTTTAAAACTAAACGTAAGTCTTTGTACTTTGTTCCTCGTAGGCGTAAGTATTTATCCGTCGTTTTAGTCACGTAGGCGCAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851293

TTAGAGCATCTCCAACAGTTTGCCAAATAAGGTTGCCATCTTTAAAAATTTGGTAAAACAATAAAATTTTATCTCCAACAGTTTGCTAAATGAGGTTGCTATTTTTAACAACTTGGTATTCCACCCCTCCGCGCGCGCATCTTTACGCGCGCGTATCTCACTTCGCATCGCGAGCTGCAGGCGTCTCACCGTCGGTACTGCTGTCAGGTGTCAGTTGATGCACAGCACCTTGCCGCCCTTGTGATGTTGCTGTCGGCTGTCAGGTGATGCACCACGCCTCGCCGTTGTCAGGTGTGCTGATGCTGCTGGTGGCCGGCAGTTTCTGCTTTGTTCCTGACGCGGATGCACTGATTTTGCTGCCTATTTATGAATGCGGATGCTCCTTGTTTCATGTTTCTGAATGCAAATCAAAATTTTCATAAGACAATAAACATTGTGGACATTTATTCTACTAAAAACTGAATGAAATATAAATCTAGATAATATGCAGGTTCTTTAAGTTGGGAACAGTAGGTTGTGGGCCTATTTTTTAAAAGTTTACTAAGTTAAAATAGCAAACTATTGGAGAGAGTCCGTTTTTTCACTTGCCATATATTTTAGGGAGTTGACAAATCACAATATTTGCTAAGTGAATTTTAGCAAACTGTTGGAGATGCTCTTA

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