SE2831295

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10300
  • Sorghum bicolor
  • SE2831295
  • hAT
  • Hat91
  • chromosome_10:45451425-45452125
  • TTAGGCAC
  • GGCACAGGCCCGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
    TTA   A   G       ----------CT   AAATCATAGACCCGGAGCGAAGCTAAAAACGGTGGGCCCTTTAATACAACTCTTATAATATAATAACAATTCTAATAAGTGTAATACATAAAAAACTCTTATGAAATAAGTTATACATTTTATTTAGATCTAAAATTGTTTTGGATTTTGACATTGTAGCACTTTCATTTGTATTTAACAATTATTGTCTAACTATAGACTAACTAGGTTTAAAAGATTAGTTTCGTAAATTACAGATAAAATGTGCAATTAGTTATTTTTTTATTCATGTATATGCCGCAAGATTCGATGTGACAAAGAATCTTTAAAAAGTTTTAGTTT
       GGC CAG CCCGGCC            GTC                                                                                                                                                                                                                                                                                                                                 
       ||| ||| |||||||            |||                                                                                                                                                                                                                                                                                                                                  
       TTG GTC GGGCCGG            CTC                                                                                                                                                                                                                                                                                                                                 
AGACGGA   -   G       CACCCCCCCACG   GTCTCGTAGGCTTGGCCCGGGAACTCCGGTCCCCCGGGATGGGGTTTACGTAATCATCCATTATCCATATTATATATATCATAAGTCGAGTTCTTCTTTCGTACAATAAATATGCCGATATACATATATGCTCAGGTGTACTAAGTCGACAGACCAGAAGGCATCAAGGCGCCGCAAACACTGAGGGAGGGAACGCGGCGCGCCGGCACAAGTAAAACTGTACGTAAACAAGCCAACGGATAAAAGGAAGTATCCATGTTTTGACGAGAACAGGGATCAGAAATAAGAGCTAAATAAATCCCGAACAAACCAATGTGGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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