SE2851299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10304
  • Sorghum bicolor
  • SE2851299
  • PIF/harbinger
  • To16
  • chromosome_5:14892559-14892752
  • TTA
  • AGGGCACTCACAATGCAAGACTCTATCACAGAGTCCAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 A          C      -C   ACACTT   TA    TTATTTATGGTATTTTGCTGATGTGGCAGCATATTTATTGAAGA
  AGGGCACTCACAATGCA GACTCTATCA AGAGTC  AAG      AAT  CATA                                            
  ||||||||||||||||| |||||||||| ||||||  |||      |||  ||||                                            A
  TCCCGTGAGTGTTACGT CTGAGATAGT TCTCAG  TTC      ATA  AATA                                            
AT                 -          A      AT   -----A   --    ATGGAGCTTGTTACACCTGAACCTCAGAATAAAAAAGATGGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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