Plant MITE

SE2851300

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10305
Sorghum bicolor
SE2851300
PIF/harbinger
To46
chromosome_7:14067385-14067751
TAA
GGGCCCGTTTGGATCCT

Secondary structure and sequence

TSD TIR

5'

3'

 TAA    CC           -------C     -T AATTCATTCTTATAATTACAATTTAGACATAGATTAATTAAGCTAATATAGTTGTATATGAAATATATTTGTATATCTATTGTTAGGCATATAAGGGACATACTTATATGTTGCATTTCTATTGTAAGGAGGTGAGTTGAAGAGTGTGCTA
    GGGC  GTTTGGATCCT        GGAAT  G                                                                                                                                                       
    ||||  |||||||||||        |||||  |                                                                                                                                                       T
    CCCG  CAAACCTAGGG        CCTCC  A                                                                                                                                                       
AATC    -A           AAGTAAAA     TA ACTTTAGATGTATTACCTAATCCGATAAACCGAACCTAAAACTGTAAGGTATTGAAAGGGTTCGAGTGTTTATTCGGATAGAGTTTAAGTATCCCACCCTCTACCTTTATATAAGATATCTAGTAATACGATATTAAGATGAGAGGTAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851300

TAAGGGCCCGTTTGGATCCTCGGAATTGAATTCATTCTTATAATTACAATTTAGACATAGATTAATTAAGCTAATATAGTTGTATATGAAATATATTTGTATATCTATTGTTAGGCATATAAGGGACATACTTATATGTTGCATTTCTATTGTAAGGAGGTGAGTTGAAGAGTGTGCTATAAGATGGAGAGTAGAATTATAGCATAATGATCTATAGAATATATTTCCATCTCCCACCCTATGAATTTGAGATAGGCTTATTTGTGAGCTTGGGAAAGTTATGGAATGTCAAAATCCAAGCCAAATAGCCTAATCCATTATGTAGATTTCAAATCCTCCAAAATGAAGGGATCCAAACAGCCCCTAA

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