Plant MITE

SE2811306

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10311
Sorghum bicolor
SE2811306
Tc1/Mariner
St10
chromosome_2:38307589-38307849
TA
TACTCCCTCCGTCCACAAATAAGTGCACATCTCGTTTCCCGAGGCGTCAAACATTTTTAAATTTGACTA

Secondary structure and sequence

TSD TIR

5'

3'

              A            C       T        C       A       A        AA          --     ACTAATATTTATTGTATGTAATATATATCATTAGATTGAGCATG
TACTCCCTCCGTCC CAAATAAGTGCA ATCTCGT TCCCGAGG GTCAAAC TTTTTAA TTTGACTA  TATATATAAA  AATAT                                            
|||||||||||||| |||||||||||| ||||||| |||||||| ||||||| ||||||| ||||||||  ||||||||||  |||||                                            A
ATGAGGGAGGCAGG GTTTATTTACGT TAGAGCG AGGGCTCC CAGTTTG AAAAATT AAACTGAT  CTTTATATAG  TATTA                                            
              C            A       T        T       A       C        --          TT     TAGTTATAAACATAGATGTTTAATCATATAATACTTTCATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811306

TACTCCCTCCGTCCACAAATAAGTGCACATCTCGTTTCCCGAGGCGTCAAACATTTTTAAATTTGACTAAATATATATAAAAATATACTAATATTTATTGTATGTAATATATATCATTAGATTGAGCATGAAATATACTTTCATAATATACTAATTTGTAGATACAAATATTGATATTATTTGATATATTTCTAGTCAAACTTAAAAAAGTTTGACTCCTCGGGATGCGAGATATGCATTTATTTGCGGACGGAGGGAGTA

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