Plant MITE

SE2831307

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10312
Sorghum bicolor
SE2831307
hAT
Hat58
chromosome_6:52711631-52711804
ATCACACT
TCAGTGGCGAAGCTACGTGTA

Secondary structure and sequence

TSD TIR

5'

3'

ATCACAC               C T   TGCTCGT   ---     A  - ACCCACAAAAATTTT    A ---     AATAGGATTGAAATTCCA
       TCAGTGGCGAAGCTA G GTA       GGA   TGCGG TG C               GAAT T   CAGTT                  
       ||||||||||||||| | |||       |||   ||||| || |               |||| |   |||||                  C
       AGTCACCGCTTCGAT C CGT       CCT   ACGCC AC G               ATAT C   ATATT                  
TCACACT               - T   TTAAACT   CCC     G  A --------------A    - TAC     TAAACTTAGTATTGGTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831307

ATCACACTCAGTGGCGAAGCTACGTGTATGCTCGTGGATGCGGATGCACCCACAAAAATTTTGAATATCAGTTAATAGGATTGAAATTCCACTATGGTTATGATTCAAATTTATACATCTATAAGACAGCCGCACCCTCCTCAAATTTGCTCTAGCTTCGCCACTGATCACACT

Copy Cancel