SE2851310

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10315
  • Sorghum bicolor
  • SE2851310
  • PIF/harbinger
  • To1
  • chromosome_2:67763244-67763492
  • TAA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               ACACCCAAAAACCCAAAACTTTAC   -   TCC  TCACATCGAATCTTACGACGCATGCATGAAGTATTAAATATAGATAAAAAGAATAATTAATTGCACAGTTTACTTGTAAATCACG
  AGGCCTTGTTTAGAT                        AAG ATT   CG                                                                                     
  |||||||||||||||                        ||| |||   ||                                                                                     A
  TCCGGAACAAATCTA                        CGT TTT   CA                                                                                     
AA               ------------------------   T   ---  AAACCCTAAAACTATGACATCGTAAAAGCAAAAATAAACTGTTTGTAACAGATTAATACCTCATTGATCCGAATTTTCTAAGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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