Plant MITE

SE2811317

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10322
Sorghum bicolor
SE2811317
Tc1/Mariner
St6
chromosome_8:45120920-45121180
TA
TACTCCCTCCGTCCACGAAAGAATCAATTCCTAGG

Secondary structure and sequence

TSD TIR

5'

3'

                      A      C     ATCC  G  --                G         C   A           AACAACATC    A   A    ------------GCA       T   AAT
TACTCCCTCCGTCCACGAAAGA TCAATT CTAGG    GT CC  AGTCAAACTTTTTAAA TTTGACTAA TTT TAGAAAAGAGT         TATA TAT AAAT               CATTATA GAA   
|||||||||||||||||||||| |||||| |||||    || ||  |||||||||||||||| ||||||||| ||| |||||||||||         |||| ||| ||||               ||||||| |||    
ATGAGGGAGGCAGGTGCTTTCT AGTTAA GATCT    CA GG  TCAGTTTGAAAAATTT AAACTGGTT AAA ATCTTTTTTTA         ATAT ATA TTTA               GTAGTAT CTT   
                      C      A     -CAA  -  AT                G         T   G           CGATTCTAA    C   G    ATCATAATAATCTAA       -   ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811317

TACTCCCTCCGTCCACGAAAGAATCAATTCCTAGGATCCGTGCCAGTCAAACTTTTTAAAGTTTGACTAACTTTATAGAAAAGAGTAACAACATCTATAATATAAAATGCACATTATATGAAAATATATTCTATGATGAATCTAATAATACTAATTTGATACTATAAATCTTAGCATTTTTTTCTAGAAATTTGGTCAAAGTTTAAAAAGTTTGACTTAGGACAACTCTAGAAATTGACTCTTTCGTGGACGGAGGGAGTA

Copy Cancel