SE2851318

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10323
  • Sorghum bicolor
  • SE2851318
  • PIF/harbinger
  • To2
  • chromosome_3:71787866-71788114
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAAAATTTTGTAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 C                  TTTC     TCC  TCACATCGAATCTTTAGACGCATGTATGGAGTATTAAATATAGATGAAAATAAAAACTAATTATACAGTTTGGTCG
  AGGCCTTGTTTAGTTCC AAAAAATTTTGTAAAATT    AGATT   CG                                                                            
  ||||||||||||||||| ||||||||||||||||||    |||||   ||                                                                            A
  TCCGGAACAAATCAAGG TTTTTTAAAACGTTTTAG    CTGTG   AC                                                                            
AA                 -                  ----     ---  ATCGTGAAAGCAAACATAAACTATTTTTAACAGGTTAGTACCTGATTTATCCGAGTTTTCTAAGCAAAGCAGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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