Plant MITE

SE2851319

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10324
Sorghum bicolor
SE2851319
PIF/harbinger
To31
chromosome_8:53049525-53049849
TAA
AGGGCCTGTTTAGATTTGAAATTTTTAGCCCAAAGAGAAAAATTTTTTTGGAATTGGGGCCTGACAACTAAACGGGGCTAAAAAATTTTAGGGCCAAAATTTTATGCTACAACTGTGCACGCATTTCTATGGAAGCCCACCAATAACAACTTGAGCTG

Secondary structure and sequence

TSD TIR

5'

3'

TA                          A CC -    A    AA     T           C    C                    T   A              T                                C      A      TG     CA
  AGGGCCTGTTTAGATTTGAAATTTTT G  C AAAG GAAA  TTTTT TGGAATTGGGG CTGA AACTAAACGGGGCTAAAAAA TTT GGGCCAAAATTTTA GCTACAACTGTGCACGCATTTCTATGGAAGCC ACCAAT ACAACT  AGCTG  
  |||||||||||||||||||||||||| |  | |||| ||||  ||||| ||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||  |||||   
  TCCCGGACAAATCTAAACTTTAAAAA C  G TTTC CTTT  AAAAA ACCTTAACCCC GACT TTGATTTGCCCCGGTTTTTT AAA CCCGGTTTTAAAAT CGATGTTGATACGTGCGTGAGGGTACCTTCGG TGGTTA TGTTGA  TTGAC  
AA                          A CA A    A    AA     C           A    C                    T   C              C                                T      C      CG     GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851319

TAAGGGCCTGTTTAGATTTGAAATTTTTAGCCCAAAGAGAAAAATTTTTTTGGAATTGGGGCCTGACAACTAAACGGGGCTAAAAAATTTTAGGGCCAAAATTTTATGCTACAACTGTGCACGCATTTCTATGGAAGCCCACCAATAACAACTTGAGCTGCATGCAGTTGCAGTTGTCATTGGTTGGCTTCCATGGGAGTGCGTGCATAGTTGTAGCCTAAAATTTTGGCCCCAAATTTTTTTGGCCCCGTTTAGTTCTCAGACCCCAATTCCACAAAAAAATTTCACTTTAGACCAAAAAATTTCAAATCTAAACAGGCCCTAA

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