SE2851322

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10327
  • Sorghum bicolor
  • SE2851322
  • PIF/harbinger
  • To11
  • chromosome_1:3704903-3705109
  • TAA
  • AGGCCTTGTTTAGTTCGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    CT          G  AAAA     G      GGTAC   -A    ATTTGTAACTATAGGCTTACAAGATTTGTCTCACAAAATACATGCAAATTGTGCA
  AGGC  TGTTTAGTTC CG    GAAAA TTTTTG     TGT  GGAC                                                       
  ||||  |||||||||| ||    ||||| ||||||     |||  ||||                                                        
  TCCG  ACAAATCAAG GT    TTTTT AAGAGC     GGT  TGTA                                                       
AA    AT          G  -AGG     G      ---AG   AG    GCTTACAAACCTGTGTACGTACCTCGTAATTTATATCTAATTTTTTTATTGATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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