SE2851323

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10328
  • Sorghum bicolor
  • SE2851323
  • PIF/harbinger
  • To116
  • chromosome_5:487619-488067
  • TGA
  • AGGCCCCCTTTGGAACATAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG     C       AA       TTGTAAAA      GATAGGAAAAACATAATAACTTTACAGGAATGCACTTGCAAAACATAGGATCCAAAAACACAGGAAAACTATTTAGGTAGGTGTTTGGATGGCTATAGGAAATTCATAGGAATAGGAATGTATAATCTCCCATGATGTGATGTGACGCTTGTCCTCTAGCTTTTTATTTCTTGGTAATACCTGTGA
  AGGCC CCTTTGG  CATAGGA        TATAGG                                                                                                                                                                                          
  ||||| |||||||  |||||||        ||||||                                                                                                                                                                                          C
  TCCGG GGAAACC  GTGTCTT        CCTTTT                                                                                                                                                                                          
AG     A       AA       TAAAGTAC      TACCTCCTAACTGAAAGGATATCCTAAGTTGTGACATCGTGGGAAACCGAATATGCTAACTTGCTATCCTTTACATTTCCTTTGTAAGGAAGTGTCGAGTAAGGTATCCTTTTCATGTCCCTTTTTTGTAGGTGAGGATGAAATAAAAGAGACCGAACGCATCCTTGTTCCGTATAGTTCTCGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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