Plant MITE

SE1820001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10329
Glycine max
SE1820001
Mutator
M1
Gm04:43005875-43006208
AAATGGTAA
ATGGTAAGGGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCTAGCATTT

Secondary structure and sequence

TSD TIR

5'

3'

AA  G  AA                 C                    C         TCTAA    AC     C     -     TTTTTTTCGCATTTGTGATGGGTGTGCATGAGGATGGTCCATAAATCGTACGGATCAAGTTGATCCGTAAAGTTGATACGAA
  AT GT  GGGTGTTGCTAGGTGCA CCAGCATTATTGCTGGTGCA CTAGCATTT     AAAT  CAAAA TGCCC ATGTG                                                                                  
  || ||  ||||||||||||||||| |||||||||||||||||||| |||||||||     ||||  ||||| ||||| |||||                                                                                  T
  TG TA  CCCACAACGATCCACGT GGTCGTAATAACGACCACGT GGTCGTGAA     TTTA  GTTTT ATGGG ACTAG                                                                                  
AA  G  AA                 A                    T         TTCTA    CT     T     A     GTATTCGGAAAATTGAACTAGGCATCTTCGGAATGCCTAGTTCAACTAGGCATACGAATTATAATTGTATGCCTAGTTGAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820001

AAATGGTAAGGGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCTAGCATTTTCTAAAAATACCAAAACTGCCCATGTGTTTTTTTCGCATTTGTGATGGGTGTGCATGAGGATGGTCCATAAATCGTACGGATCAAGTTGATCCGTAAAGTTGATACGAATCAAGTTGATCCGTATGTTAATATTAAGCATACGGATCAACTTGATCCGTAAGGCTTCTACGGATCAAGTTAAAAGGCTTATGGATCAAGGGTATTTTTGTCATTTATCTTAAGTGCTGGTTGCACCAGCAATAATGCTGGATGCACCTAGCAACACCCAAATGGTAA

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