SE1830006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10334
  • Glycine max
  • SE1830006
  • hAT
  • Hat2
  • Gm05:16669924-16670539
  • ATCATGAT
  • ATCATGATTAGACATGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
                   ---    --  G   TGGGTACGGGTATTATCTCCTCAATTTTTTATTCCGACTCCCCAACATATCCTTATACCTGTATCCGATACCTGACAGGTTTAAGTTTATTATCTCATCCCCGTACCCATCGGGTACTCGTTGGGTATTGGGTATTCCCGACCCCGTCCCATACCCAATTCAAATTAGAAAAATATTTTTTGTAAAAAAAATATTAAAAATTTGATTTTAGAATAAATAAATTGATTGTTAAACATTTATTTTTAACCACTTATATATCAATAAATTTATTATAGCG
ATCATGATTAGACATGACA   ATGG  GT GGG                                                                                                                                                                                                                                                                                     
|||||||||||||||||||   ||||  || |||                                                                                                                                                                                                                                                                                      
TAGTACTAATCTGTACTGT   TTTG  CA TGG                                                                                                                                                                                                                                                                                     
                   TCT    AA  -   ACATTCATGGGCAAGCTTAAGCAGGGCTGAAACTGTCCATTATGGACTCAACTGGCCCATACCTAAGTCCAAAAGGAGCTATTAGTTTTCAGCCCATGCCCATACATTAATGATCTAGGTAGGGTTGGGGCTTGGGCTTGGGTAGGGCGGTGAATTTTAGAAATCTTAAAAACGTATTAAATTAGTTTTCCGTATCTTAAAAATAATGATCAATTAAAATAAAGTCTTAAAAATGTATTAAATTATAATAAAAGAATTACTAAAAACATCTGTGTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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