Plant MITE

SE1810007

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10335
Glycine max
SE1810007
Tc1/Mariner
St1
Gm13:22961672-22961968
TA
TACTCCCTCTATTCCTATTTATAAGA

Secondary structure and sequence

TSD TIR

5'

3'

                          TCC      GAAATGGGACTTTTTCCTTTTTATAAGACCCAATCTATAATGTTCCTTGCAGTAATTATTTTTAGACTAGAAATACCCCTAATTAAAAGAAGAGAGAATGTATTGACAAACAATT
TACTCCCTCTATTCCTATTTATAAGA   AAGTTT                                                                                                                   
||||||||||||||||||||||||||   ||||||                                                                                                                    
ATGAGGGAGGTAAGGATAAATATTCT   GAGTTA                                                                                                                   
                          ---      ATGAATTAATTAGTTCTAATTACTTTCACCAATTAAATCAACTATCTTTATTTAAAAAGAAATTAAATATTGAAAAAGGGTTTGATAGGAACAGTAATTATGAGGAGAGAGAAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810007

TACTCCCTCTATTCCTATTTATAAGATCCAAGTTTGAAATGGGACTTTTTCCTTTTTATAAGACCCAATCTATAATGTTCCTTGCAGTAATTATTTTTAGACTAGAAATACCCCTAATTAAAAGAAGAGAGAATGTATTGACAAACAATTAGAAGAGAGAGGAGTATTAATGACAAGGATAGTTTGGGAAAAAGTTATAAATTAAAGAAAAATTTATTTCTATCAACTAAATTAACCACTTTCATTAATCTTGATTAATTAAGTAATTGAGTCTTATAAATAGGAATGGAGGGAGTA

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