SE1820014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10342
  • Glycine max
  • SE1820014
  • Mutator
  • M7
  • Gm18:7360522-7361011
  • AAACCTAAA
  • GGCAAAATTGCATTTTTAGTCTCCCAGTTTATCTCCAGTTTCAGATTTGGTCCCTCAATAATTTAATTCACAAATTCGGTCCCCTTATTTTGTAAAATTGTGCAATGCTGGTCCCCCAGGCCACAATTGGACGTTGATCGTTAACAAGTGTTGTTGACTACCACGTGTCACGTTCTTATTGGATTATGATTGCCACATGTCATGTTCTGATTG

Secondary structure and sequence

TSD    TIR
5'



3'
AAACCTAAA            TT   A                        A         -   CAA                  C                              C       C    C                             T                                 T       CC                   -ATC   -   AACAACAATTTAT
         GGCAAAATTGCA  TTT GTCTCCCAGTTTATCTCCAGTTTC GATTTGGTC CCT   TAATTTAATTCACAAATT GGTCCCCTTATTTTGTAAAATTGTGCAATG TGGTCCC CAGG CACAATTGGACGTTGATCGTTAACAAGTG TGTTGACTACCACGTGTCACGTTCTTATTGGAT ATGATTG  ACATGTCATGTTCTGATTG    AAT GAA             
         ||||||||||||  ||| |||||||||||||||||||||||| ||||||||| |||   |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||    ||| |||              
         CCGTTTTAACGT  AAA CAGGGGGTCAAATAGAGGTTAAAG TTAAACCAG GGA   ATTAAATTAAGTGTTTAA CTAGGGGAATAAAACATTTTGGCACGTTAC ACCAGGG GTCC GTGTTAACCTGCAACTGGTAATTGTTTAC ACAACTGATGGTGCACAGTGCAAGAATAACCTA TACTGAC  TGTACAGTACAAGATTAAC    AGT GAG             
AAATCCAAA            TT   C                        C         A   -TC                  A                              A       A    A                             T                                 C       TA                   CTAC   T   ATATTTTCTACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End