SE1830015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10343
  • Glycine max
  • SE1830015
  • hAT
  • Hat2
  • Gm08:20318544-20319136
  • ACCTCACC
  • TAGACATGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACCTCACC   A        ----C        A          TATTGCCTCCTTAGTCCCCGACCTCGACTCCCCAACATATACTGTACACGTCCCCGATACTCGACGAGTTAAAATTTGTTACCACATCCCCCTACCCGTTGGGTATCGTGTATTCTTGTCCTAGCCCCGTCCGCGGTTCAGATTTGTAAAAAAAGTTTTTTTTGTAAAAAAGTTATATTGAAAATCTGATTTTAAAAAGCAATAAATTGATTGTTACACATTTATTTTTAAGTACTTATATATCAATAAATTAAT
        TAG CATGGCAA     GGGATGGG CGGGGACGGG                                                                                                                                                                                                                                                               
        ||| ||||||||     |||||||| ||||||||||                                                                                                                                                                                                                                                                
        ATC GTACTGTT     GGGGATGG GCACTCATAG                                                                                                                                                                                                                                                               
CCACTCCA   C        ACTAT        -          GCAGGTTTGGGCAGGGCTAGAACTGTCCCTTATGAGCTCAACTGGTCCATGCCCAAGCCCAAGCTACTAATGGGCTAAAAAAAATAACCCCAGTCCCAACCCCTATCCCTACAGTGATGGGCAAGGTATGGGTAAGAGCATGCGCGGGACTACTACTTTAATAATCAAAATAATTAATAAACGATTAAAATAAAATATTAAAAATGTATTAAATTCTAAGAAAAGTACTATTAAAAACATCTGTTTACGCGATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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