SE1830016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10344
  • Glycine max
  • SE1830016
  • hAT
  • Hat4
  • Gm15:17921904-17922512
  • AGTGGAAG
  • TAGGGGTGAGAATAGGCCAGGCCGACCTACAGGGGCCTACGACCTGGCCTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AGTGGAAG        A              -    -T  ----        AC  -          ATAAA  TTAGCCTGAACTAGCCTATTTAATTAAAAGGTTAGGCTCAGGCTTTTTTAAAAGCCTATTAAATTAAATAGACTAGGTTTAGGCTTATTAAAAAACCTTATAAGCCTGATAGGCCGGCCTATATATATATATATATATATACTTATATTATTTTTTGGATACAATTAAATTTTTTTTTGAAACTATCAGACTTTGATTACACATTATTGCTCCATAACTTCTATTCCTATAATCAAG
        TAGGGGTG GAATAGGCCAGGCC GACC  AC    AGGGGCCT  GA CCTGGCCTAC     GC                                                                                                                                                                                                                                             
        |||||||| |||||||||||||| ||||  ||    ||||||||  || ||||||||||     ||                                                                                                                                                                                                                                             G
        ATCCTCAC CTTATCCGGTCCGG CTGG  TG    TTTCCGGA  CT GGATCGGATG     CT                                                                                                                                                                                                                                             
GAAGGTGA        C              T    TC  AAAT        --  C          -----  ACTTAGAAACTCCGGACTCGGACTGGATATCGGATAGTTTCCGATAATAAAACCGAGTCGGACCGGAAAAATTTTCGGGCCGGACCAGACTATCGGAAAAATTTTCGGAAGAAGTGTTATTTATAAATTATAAAATACCTCATCCTTACATTATCCTTTCAACTTCTTTTTCCTTTCAGTTAGTTTTATTACTCTTTATATTTTCCCGTGTACTGAGTGGATTTAACATTAATTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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