SE1820017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10345
  • Glycine max
  • SE1820017
  • Mutator
  • M1
  • Gm13:23654578-23654977
  • TAAAGTAAA
  • AGGGTGTTGCTAGGTGCACCCAGCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAGTAA                           TTATT      TCAAAACTGTCCCTATACTTTTTTCGCATTTGTGATGGGTGTGTGTGAGGATGGTCCGTAAATCGTACGGATCAAGTTGATCCGTAAGGTTGATACGGATCAACTTGATCCGTAAGCCTTTTACAGAACAATACGGATCAAGTTGATCTGTAAAA
        AGGGTGTTGCTAGGTGCACCCAGCATT     AAAATA                                                                                                                                                           
        |||||||||||||||||||||||||||     ||||||                                                                                                                                                           A
        TCCCACAACGATCCACGTGGGTCGTAA     ACGACC                                                                                                                                                           
AAATGAAA                           ---TA      ACGTGGGTCGTGAATTCTACTTTACTGCTTTTATAGGAACTAGGCATTTGGTAAATTCAACTAGGCATTTTCAGAATGCCTAGTTGAACTAGGCATTTGAAAAATGCCTAATTAAACTAGGCATCTTCGGAATACCTAGTTCAACTAGGCATTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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