Plant MITE

SE1820018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10346
Glycine max
SE1820018
Mutator
M1
Gm02:7703774-7704076
GTTAACCAA
GTTAACCAAGAGTGCTACTAGGTGCACCCAGCATTATTGTTGGTGCACTCAGCA

Secondary structure and sequence

TSD TIR

5'

3'

         CAA     CTA           C                  C      CTAACCA      -       ---------------ATA   C              T           A               A      C      C    GT
   GTTAAC   GAGTG   CTAGGTGCACC AGCATTATTGTTGGTGCA TCAGCA       TGAAAA GACAGAA                  CCC TTACGGATCAAGTT ATTCGTAAGTT ATTTTTAAGACTTAC GATCAA TTGATC GTAA  
   ||||||   |||||   ||||||||||| |||||||||||||||||| ||||||       |||||| |||||||                  ||| |||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||| ||||  T
   CAATTG   CTCAC   GATCCACGTGG TCGTAATAACGACCACGT GGTCGT       ACTTTT CTGTTTT                  GGG AATGCCTAGTTCAA TAGGCATTCAA TAAAAATTCTGAATG CTAGTT AACTAG CATT  
AAC      ---     AAC           A                  A      --AAGAA      A       GACAAGGACGATTAAAGA   A              C           C               C      C      A    TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820018

GTTAACCAAGAGTGCTACTAGGTGCACCCAGCATTATTGTTGGTGCACTCAGCACTAACCATGAAAAGACAGAAATACCCCTTACGGATCAAGTTTATTCGTAAGTTAATTTTTAAGACTTACAGATCAACTTGATCCGTAAGTTTTTTACAGATCAACTTGATCCGTAAGTCTTAAAAATCAACTTACGGATCAACTTGATCCGTAAAGGGAGAAATTAGCAGGAACAGTTTTGTCATTTTCAAAGAATGCTGGATGCACCAGCAATAATGCTAGGTGCACCTAGCAACACTCGTTAACCAA

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