Plant MITE

SE1810019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10347
Glycine max
SE1810019
Tc1/Mariner
St2
Gm13:1126462-1126729
TA
TACTACCTCTTTCATATCTTTTGAT

Secondary structure and sequence

TSD TIR

5'

3'

        -    -             GTTTAAG      GGATA     AAAGAAATATAAA       TAA   T ATTATATTTGAACTAAAATGATTTTATTTAATACTTTGATGTTTCATACTTAGCTTGTACCAAT
TACTACCT CTTT CATATCTTTTGAT       GTTATT     TAGAT             ATGGAAC   AAA T                                                                
|||||||| |||| |||||||||||||       ||||||     |||||             |||||||   ||| |                                                                G
ATGATGGA GAAA GTATAGAAAATTA       TAATGA     ATTTA             AGGGTTT   TAT A                                                                
        A    A             AATTACA      -AAAA     ----------AAA       ---   - AACTATAAAATTTTAAAGTTTCAAATTAATTACTTAAAAGAGTGTATATAGACATAAATTATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810019

TACTACCTCTTTCATATCTTTTGATGTTTAAGGTTATTGGATATAGATAAAGAAATATAAAATGGAACTAAAAATTATTATATTTGAACTAAAATGATTTTATTTAATACTTTGATGTTTCATACTTAGCTTGTACCAATGGATATTAAATACAGATATATGTGAGAAAATTCATTAATTAAACTTTGAAATTTTAAAATATCAAATATTTTGGGAAAAATTTAAAAAAGTAATACATTAAATTAAAAGATATGAAAAGAAGGTAGTA

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