Plant MITE

SE1820022

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10350
Glycine max
SE1820022
Mutator
M9
Gm13:23402161-23402378
CTTTGCCTC
GGCAATTGCTTTTCTGCGCCTTTATCTTTGTTTCCTGCATCT

Secondary structure and sequence

TSD TIR

5'

3'

CTTTGCCTC    -------        T     C  T   -C   G    C       AAT     --       GTAATTTCAGATTAGTCTTTTCATAATATAAATTTTACATTTTA
         GGCA       ATTGCTTT CTGCG CT TAT  TTT TTTC TGCATCT   CTAAT  CTGAAAT                                            
         ||||       |||||||| ||||| || |||  ||| |||| |||||||   |||||  |||||||                                             
         CCGT       TAACGAAA GACGT GA ATA  AAA AAAG ACGTGGA   AAAAT  AAGATTT                                            
       AT    TTCCTAT        -     A  C   TT   G    -       ---     TG       TTTGGATAAAGTTTTACATTTTAATGTAAGACCTAATTAGAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820022

CTTTGCCTCGGCAATTGCTTTTCTGCGCCTTTATCTTTGTTTCCTGCATCTAATCTAATCTGAAATGTAATTTCAGATTAGTCTTTTCATAATATAAATTTTACATTTTAGAAAGATTAATCCAGAATGTAATTTTACATTTTGAAATAGGTTTTTTAGAAGTTAAAAAGGTGCAGAAAGAAATTATACAGATGCAGAAAGCAATTATCCTTTGCCTA

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