SE1820023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10351
  • Glycine max
  • SE1820023
  • Mutator
  • M10
  • Gm13:24663339-24663808
  • TTTTAGTTT
  • GGGACATGCTAGGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTTAGTTT                ---     CAGCAATTAGGTGAATGGGCAAAATTGCCCTTGTGTTAAAAAAAATAATTTCTTCTTCCGGAAGAAGGTTTTTCCGGAAAGTTTCCGGAAGAACAATTTGTGTTCTACCGGAATAACTTTTCTCCGGAAGAACAAATTGTTGTTCTTCCGGAAGAAGGTTCTTCCGGAAAGTTTCCAAAAGAAGGTTCTTCCGGTAGAACAAT
          GGGACATGCTAGGTGT   GCACC                                                                                                                                                                                                           
          ||||||||||||||||   |||||                                                                                                                                                                                                            
          CCCTGTACGATCCACG   GTCGT                                                                                                                                                                                                           
ATTTGATTTT                TGG     TGTAACGACGACGTGGATCGTTAATCCACTTACCCGTTTTAACAGGAACGCAATTTTTTTTATTAAAGAAGAAGGCCTTCTTCCAAGAAGGTCTACTTGTTAAACAAGATGGCCTTCTTGGAAGAAAGCCTCTTCGATGGCCTTCTTCCAAGAAAGCCATCTTGTTTAACAAGTAGGTCTTCTTGTAAGAAGGCCTTCTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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