SE1820031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10359
  • Glycine max
  • SE1820031
  • Mutator
  • M1
  • scaffold_22:960764-961135
  • ATTCTATTA
  • GGGTGTTGCTAGGTGCATCCAATATTATTGGTGGTGCACC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCTATTA                     A        G         CA       TTAAAAATGTCAAAATTATCCTTGTACTTTCTTCGCATTTGTGATGGGTGTACGTGAGGGTGGTCCGTAAATCGAACGGATCAAGTTGATCCGTAAGGTTAATATGGATCAAGTTGATCCGTATGTTG
         GGGTGTTGCTAGGTGCATCCA TATTATTG TGGTGCACC  ACATTTT                                                                                                                                
         ||||||||||||||||||||| |||||||| |||||||||  |||||||                                                                                                                                A
         CCCACAACGATCCACGTGGGT ATAATAAC ACCACGTGG  TCGTGAA                                                                                                                                
ATTATCTTA                     C        G         -A       TTCCCCTTTTCTGACTTTATGGGAATTAGGCATTCAGAAAATACCTAGTTGAACTAGACATTTAGAAAATGCCTAGTTGAACTAGGTATTCAGAAAATGCTTAGTTCAACTAGGCATACGCGAATTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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