Plant MITE

SE1810037

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10365
Glycine max
SE1810037
Tc1/Mariner
St4
Gm17:4313709-4314094
TA
TACTCCCTCCCTCCCTGAATATAAGAATCTTT

Secondary structure and sequence

TSD TIR

5'

3'

          C               A     TTTC        TTGTCCCTTTTTATAAGACTACTTTCAAGTTGTCTTTTGCATTAATTATTTTTGACCCATATACCCTTTATTACTTTATAATAAATACTATATATTTAATAGATAAATTCATTATCTCTCTTATAAGAATTGGATAAGAAGACTAGCACAC
TACTCCCTCC TCCCTGAATATAAGA TCTTT    AGTTTTAT                                                                                                                                                       
|||||||||| ||||||||||||||| |||||    ||||||||                                                                                                                                                        
ATGAGGGAGG GGGGATTTATATTCT AGAAA    ATTGATTA                                                                                                                                                       
          C               G     ----        AATGTGGGAAATTTTTTCAACCACAATTATATCAATCATCGTTATTTAAAGAAATTGTTAAACATAATAAAACGGTTTTAATGGGAACTCAAATAACCCTGAGTATTAGAGAGAGAAAGGTGAATTAACGAAAGTGTGGATTAATTAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810037

TACTCCCTCCCTCCCTGAATATAAGAATCTTTTTTCAGTTTTATTTGTCCCTTTTTATAAGACTACTTTCAAGTTGTCTTTTGCATTAATTATTTTTGACCCATATACCCTTTATTACTTTATAATAAATACTATATATTTAATAGATAAATTCATTATCTCTCTTATAAGAATTGGATAAGAAGACTAGCACACATTAATTAATTAGGTGTGAAAGCAATTAAGTGGAAAGAGAGAGATTATGAGTCCCAATAAACTCAAGGGTAATTTTGGCAAAATAATACAAATTGTTAAAGAAATTTATTGCTACTAACTATATTAACACCAACTTTTTTAAAGGGTGTAAATTAGTTAAAAGAGTCTTATATTTAGGGGCGGAGGGAGTA

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