Plant MITE

SE1850040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10368
Glycine max
SE1850040
PIF/harbinger
To4
Gm12:25457568-25457791
TTA
AGGGCCAGTTTGTTTAAAGTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT    CC            G   --------TTTG                   ------ AATAAAATAAGCGGTTTTCTGTTTTTTAGTATGTTTGTCTAAACTGCTTATGCTTAA
  AGGG  AGTTTGTTTAAA TTA            TTGAAATAAGCGCTTATTT      T                                                         
  ||||  |||||||||||| |||            |||||||||||||||||||      |                                                          
  TCCC  TCAAACAAATTT AAT            AATTTTATTCGCAAAAAAT      A                                                         
AT    AC            G   TTTTTTCGTTGA                   ATGTTC CAAAAAAATACTTCGTCTATCCTAAACGAAGAATTTTATGTATCTTTTGACGATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850040

TTAGGGCCAGTTTGTTTAAAGTTATTTGTTGAAATAAGCGCTTATTTTAATAAAATAAGCGGTTTTCTGTTTTTTAGTATGTTTGTCTAAACTGCTTATGCTTAAAAATAGCAGTTTTCTATGTATTTTAAGAAGCAAATCCTATCTGCTTCATAAAAAAACACTTGTATAAAAAACGCTTATTTTAAAGTTGCTTTTTTTAAGTTTAAACAAACTCACCCTTA

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