Plant MITE

SE1830043

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10371
Glycine max
SE1830043
hAT
Hat5
Gm01:54018626-54018902
TTTATTTT
AGTAAATTACACTAACCGCTCTTGAAGCTTTATGAAATTACACAAAGTCACCTTGCTTTTTCTACCCCTACACTAACTCCCCT

Secondary structure and sequence

TSD TIR

5'

3'

 TTTATTTTG          A              A C   A              G  A           CT  CCC    C     C C  -------T  T  C TGAAAAACATTACACCGACACTCCTTATAAATTAC
          AGTAAATTAC CTAACCGCTCTTGA G TTT TGAAATTACACAAA TC CCTTGCTTTTT  AC   TACA TAACT C CT        GA TG T                                   
          |||||||||| |||||||||||||| | ||| |||||||||||||| || |||||||||||  ||   |||| ||||| | ||        || || |                                   A
          TCATTTAATG GATTGGTGGGGATT C AAA ACTTTAATGTGTTT AG GGGACGAAAAA  TG   ATGT ATTGA G GA        TT GT A                                   
TTTTATTTTA          G              C C   C              G  G           AT  TAA    C     A A  TTATCCCC  -  - CCACATTACAAAAAGTTTGTCAATTCCCCCCATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830043

TTTATTTTGAGTAAATTACACTAACCGCTCTTGAAGCTTTATGAAATTACACAAAGTCACCTTGCTTTTTCTACCCCTACACTAACTCCCCTTGATTGCTTGAAAAACATTACACCGACACTCCTTATAAATTACACTTACCCCCCTTAACTGTTTGAAAAACATTACACCATGTTCCCCTATTAGAGAAGTTACTGTAAATGTTAAAAAAGCAGGGGGAGTTTGTGTAATTTCACAAACCCTTAGGGGTGGTTAGGGTAATTTACTATTTTATTTT

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