SE1820045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10373
  • Glycine max
  • SE1820045
  • Mutator
  • M10
  • Gm04:46609732-46610163
  • AAAAGTTTA
  • AAAGTTTAGGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAGCAATTAGGTGAATGGGCAAAATTGCCCTTGTATTAAAAAAATAATTCCTTCTTTCGGAAGAAGGTTCTTCCGGTAGAATAATTTATTCTATCAGAAGAA

Secondary structure and sequence

TSD    TIR
5'



3'
A   G   A                                                                          A         -     CC                T                        A  A      CC         AGAAGTTACCGGAAGAAAGCTACCGGAAGAAGATTCTTTCGGTAGAACAAATTG
 AAA TTT GGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAGCAATTAGGTGAATGGGCAAAATTGCCCTTGT TTAAAAAAA TAATT  TTCTTTCGGAAGAAGG TCTTCCGGTAGAATAATTTATTCT TC GAAGAA  TTCTTCTGG                                                      
 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||||| |||||||||||||||||||||||| || ||||||  |||||||||                                                       
 TTT AAA CCCTGTACGATCCACGTGGGTCGTTGTAACGATCACGTGGGTCGTTAATCCACTTACCCGTTTTAACGGGAACG AATTTTTTT ATTAA  AAGAAAGTCTTCTTCC AGAAGGCCATCTTGTTAAATAAGA AG CTTCTT  TTTAACAAG                                                      
A   G   A                                                                          C         T     AA                C                        A  C      -A         ATGGCCTTCTTGGAAGAAAGCTTTTGAAAGGCCTTCTTCCAAGAAGGCCTACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End