SE1850057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10385
  • Glycine max
  • SE1850057
  • PIF/harbinger
  • To9
  • Gm08:2877307-2877583
  • TTA
  • AGGGCCTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            GGTG         C                                     -     A     A  C     T   T                T  C      G      TCAT       TT   AG
  AGGGCCTGTTTG    TAAGCTTCT TAGAAGTACTTCTAGAAGAAGAAAATAAGAAGAAAAA GATGA ATGAA TT TCCAT AGC AAAATGAGTTTTCCAT AG TAATTT TAGAGG    CTCATCT  TAG  
  ||||||||||||    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||| |||||||||||||||| || |||||| ||||||    |||||||  |||  A
  TCCCGGACAAAC    ATTCGAAGA ATCTTCGTGAAGATTTTCTTCTTTTATTCTTCTTTTT CTACT TACTT AA AGGTA TCG TTTTATTCAAGAGGTA TC ATTAAA ATCTTC    GAGTGGA  ATC  
AT            --GG         A                                     T     C     G  A     T   T                C  A      A      ----       -T   GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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