Plant MITE

SE1850059

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10387
Glycine max
SE1850059
PIF/harbinger
To10
Gm03:43610752-43611040
TAA
AGAGCATCTCCAATGGGGGGTGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TA               G    T    CCATGATTT   AG    A  AACG -    TT  --   TTCTTCTGCATTGGAGCATAATGACGTGACAAAGTGGGTTTCTTGGTTGCTAAGGATAGTTTCTTATATAAGAAACTCTAATCTTT
  AGAGCATCTCCAATG GGGG GCTT         CTT  GTCA GT    G TTTC  GT  GAG                                                                                      
  ||||||||||||||| |||| ||||         |||  |||| ||    | ||||  ||  |||                                                                                       
  TCTCGTAGAGGTTAC TTCT TGAG         ACC  TAAA GA    A TAAT  GA  AAC                                                                                      
AA               G    T    ------TAA   --    -  ---- G    -A  AA   ACCAGAGCGTCACGGTACGGTAAGTATTCTTTGAGTACATTTTAAAATGAGGTTACGTTCTTTAGGATTTTTTGGTGTTCTTTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850059

TAAGAGCATCTCCAATGGGGGGTGCTTCCATGATTTCTTAGGTCAAGTAACGGTTTCTTGTGAGTTCTTCTGCATTGGAGCATAATGACGTGACAAAGTGGGTTTCTTGGTTGCTAAGGATAGTTTCTTATATAAGAAACTCTAATCTTTGAATTTCTTGTGGTTTTTTAGGATTTCTTGCATTGGAGTAAAATTTTACATGAGTTTCTTATGAATGGCATGGCACTGCGAGACCACAAAAAGATAATGAAGAAATCCAAATGAGTTTCTTGCATTGGAGATGCTCTAA

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