Plant MITE

SE1820064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10392
Glycine max
SE1820064
Mutator
M18
Gm03:37873259-37873456
TTAAATTTG
GG

Secondary structure and sequence

TSD TIR

5'

3'

TTAAATTT  CAAA                     A                        AAG  T       -   -T  ACAAAATTGTGTTGCCCATG
        GG    TGCTAACTAGTGTCCTTAGGG ATTGGTTAAGGAACTAAAAGGAGA   GT TTTATTG GGA  GC                    
        ||    ||||||||||||||||||||| ||||||||||||||||||||||||   || ||||||| |||  ||                    A
        CC    ACGATTGGTCACGGGAATCCC TAACCAATTCTTTGATTTTCCTCT   CA AAATGAC CCT  AG                    
TTTAAATT  CAGA                     G                        ---  T       A   CT  TATTCTCTCGTATTTTTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820064

TTAAATTTGGCAAATGCTAACTAGTGTCCTTAGGGAATTGGTTAAGGAACTAAAAGGAGAAAGGTTTTTATTGGGATGCACAAAATTGTGTTGCCCATGACTTTTTTTATGCTCTCTTATGATCTCCACAGTAAATACTCTCCTTTTAGTTTCTTAACCAATGCCCTAAGGGCACTGGTTAGCAAGACCCTTAAATTT

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