SE1820077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10405
  • Glycine max
  • SE1820077
  • Mutator
  • M20
  • Gm13:11187200-11187701
  • TATGATAAA
  • TATGATAAAGGTTTAAATACATTTTTAGTCCTTTAAATTTGGGTAATTAATAAAAATATTCTATTTTTAATAGTTTATCAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
      G  AA           C                             -------------A        TTC        A      A          GAAAA   ACTTTTGACCTC      TCTTT    -------  ATATTGTGACAATTTGTGAGAATTTTACATTGTCAGGATTTTTTTAAATTTGTTTTCTTTAAAATAATTTATGACAATTTAAAACTATCAGAATATGAAAAAATCACAACTCAACTTTCATGC
   TAT AT  AGGTTTAAATA ATTTTTAGTCCTTTAAATTTGGGTAATTA              TAAAAATA   TATTTTTA TAGTTT TCAAATTTTT     GTT            TCTCAT     TTGT       TA                                                                                                                           
   ||| ||  ||||||||||| |||||||||||||||||||||||||||||              ||||||||   |||||||| |||||| ||||||||||     |||            ||||||     ||||       ||                                                                                                                            
   ATA TA  TCCGAATTTAT TAAAAATTAGGAAATTTAAACTTATTAAT              GTTTTTAT   ATAAAAAT ATCAAG AGTTTAAAAG     CAA            TAAAGT     GTGA       CT                                                                                                                           
AAA   G  --           A                             AAGAAAATTAAAAA        TTA        A      G          AGAAA   --------GTAT      -----    AATACCA  AAAAATTGGTAGTTTTGAATAAAAAAATTTTATTAAATACTGCTAAAATTTGGCAGTTTTAAAAATAAACATACCAAACCACTGGAAAAAGTATAAAATCATTAAAATTTCTTCTTTTTATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End